Geochemical Data Toolkit for Windows


[Up] [Top]

Documentation for package ‘GCDkit’ version 3.00

Help Pages

A B C D E F G H I J L M N O P Q R S T V W Z misc

-- A --

about About GCDkit
accessExport Export to Access
accessVar Accessing data in memory of R
addContours Add contours
addResults Appending results to data
addResultsIso Append Sr-Nd isotopic data
AFM AFM diagram (Irvine + Baragar 1971)
ageEps Plot Sr or Nd growth lines
ageEps2 Plot Sr or Nd growth lines
ageSr Plot Sr or Nd growth lines
Agrawal Trace-element based discrimination plots for (ultra-)basic rocks (Agrawal et al. 2008)
Ague Concentration ratio diagram (Ague 1994)
appendSingle Append empty label or variable
apSaturation Apatite saturation
assign1col Uniform colours
assign1symb Uniform symbols
assignColLab Colours by label
assignColVar Colours by a variable
assignSymbGroup Symbols/colours by groups
assignSymbLab Symbols by label
assignSymbLett Symbols by label - initial letters

-- B --

Batchelor Batchelor and Bowden (1985)
binary Binary plot
binaryBoxplot Binary boxplot
Boxplot isotopic ratios/model ages Statistical plots of isotopic ratios/model ages
boxplotIso Statistical plots of isotopic ratios/model ages
bpplot2 Box-Percentile Plot

-- C --

calc Calculate a new variable
calcCore Calculation of user-defined parameters
Cann Pearce and Cann (1973)
Catanorm Niggli's Molecular Norm (Catanorm)
chullGroups Outline individual groups in a binary plot
CIPW CIPW norm
CIPWhb CIPW norm
classify Generic Classification Algorithm
cluster Statistics: Hierarchical clustering
Colours: Plotting symbols Plot editing: Colours
Colours: set to B&W Plot editing: Colours
Colours: subtitle Plot editing: Colours
Colours: title Plot editing: Colours
contourGroups Outline individual groups in a binary plot
coplotByGroup Coplot by groups
coplotTri Coplot for three variables
Correlation coefficient patterns Statistics: Correlation coefficient patterns
correlationCoefPlot Statistics: Correlation coefficient patterns
Cox TAS diagram (Cox et al. 1979)
CoxPlut TAS diagram (Cox et al. 1979)
CoxVolc TAS diagram (Cox et al. 1979)
crosstab Cross table of labels
customScript Add a new variable to a script
cutMy Groups by numerical variable

-- D --

dbfExport Export to DBF
Debon BA and PQ diagrams (Debon + Le Fort 1983)
DebonBA BA and PQ diagrams (Debon + Le Fort 1983)
DebonPQ BA and PQ diagrams (Debon + Le Fort 1983)
deleteSingle Delete label or variable
DMage Recalculations of the Sr-Nd isotopic data
DMGage Recalculations of the Sr-Nd isotopic data
DMLHage Recalculations of the Sr-Nd isotopic data

-- E --

Edit: subtitle Plot editing: Changing titles and axis labels
Edit: title Plot editing: Changing titles and axis labels
Edit: x label Plot editing: Changing titles and axis labels
Edit: y label Plot editing: Changing titles and axis labels
editData Edit numeric data
editLabFactor Edit label as factor
elemIso Binary plot of a WR geochemical parameter vs isotopic ratio
epsEps Binary plot of initial Sr isotopic ratios vs. initial epsilon Nd values
epsilon Recalculations of the Sr-Nd isotopic data
excel2007Export Export to Excel
excelExport Export to Excel

-- F --

FeMiddlemost Adjustment of Fe oxidation ratio (Middlemost 1989))
figAdd Plot editing: Add
figAddArrow Plot editing: Add
figAddBox Plot editing: Add
figAddCurve Plot editing: Add
figAddFit Plot editing: Add
figAddReservoirs Plot editing: Add
figAddText Plot editing: Add
figAlab Plot editing: Changing titles and axis labels
figBlab Plot editing: Changing titles and axis labels
figBw Plot editing: Colours
figCex Plot editing: Scaling text or plotting symbols
figCexLab Plot editing: Scaling text or plotting symbols
figCexMain Plot editing: Scaling text or plotting symbols
figCexSub Plot editing: Scaling text or plotting symbols
figClab Plot editing: Changing titles and axis labels
figCol Plot editing: Colours
figColMain Plot editing: Colours
figColours Plot editing: Colours
figColSub Plot editing: Colours
figEdit Plot editing: Changing titles and axis labels
figGbo Defining groups on Figaro-compatible plots
figGrid Plot editing: Add
figIdentify Plot editing: Identification of plotted symbols
figLegend Plot editing: Add
figLoad Loading a Figaro plot
figMain Plot editing: Changing titles and axis labels
figMulti Figaro: Multiple plot by groups
figRedraw Redrawing/refreshing a Figaro plot
figSave Saving a Figaro plot
figScale Plot editing: Scaling text or plotting symbols
figSub Plot editing: Changing titles and axis labels
figTicks Plot editing: Add
figUnzoom Plot editing: Zooming
figUser Plot editing: User defined parameter
figXlab Plot editing: Changing titles and axis labels
figXlim Plot editing: Zooming
figYlab Plot editing: Changing titles and axis labels
figYlim Plot editing: Zooming
figZoom Plot editing: Zooming
figZooming Plot editing: Zooming
filledContourFig Filled contours plot
Frost Frost et al. (2001)

-- G --

gcdOptions GCDkit options
graphicsOff Close all graphic windows
groupsByCluster Groups by cluster analysis
groupsByDiagram Groups by diagram
groupsByLabel Groups by label

-- H --

Harris Harris et al. (1986) Hf-Rb/30-Ta*3
Hastie Co-Th diagram (Hastie et al. 2007)
Highlight multiple points Plot editing: Identification of plotted symbols
highlightSelection Plot editing: Identification of plotted symbols
HTMLTableMain Export to HTML tables
HTMLtableOrdered Export to HTML tables
HTMLTableResults Export to HTML tables
HTMLTableWR Export to HTML tables

-- I --

ID Sample identification
Identify points Plot editing: Identification of plotted symbols
info Info on datafile
initial Recalculations of the Sr-Nd isotopic data
isochron Rb-Sr and Sm-Nd isochrons
isocon Isocon plots (Grant 1986)
isoconAtoms Isocon plots (Grant 1986)
isoconOxides Isocon plots (Grant 1986)

-- J --

Jensen Jensen cation plot (1976)
joinGroups Merge groups
Jung Al/Ti thermometer for granitic rocks (Jung + Pfander 2007)

-- L --

LaRoche R1-R2 diagram (De la Roche et al. 1980)
Laroche R1-R2 diagram (De la Roche et al. 1980)
LaRocheCalc Calculation: De la Roche
LarochePlut R1-R2 diagram (De la Roche et al. 1980)
LarocheVolc R1-R2 diagram (De la Roche et al. 1980)
loadData Loading data into GCDkit
loadDataOdbc Loading data into GCDkit

-- M --

Maniar Maniar and Piccoli (1989)
mergeData Appending data to a current data set
mergeDataCols Appending data to a current data set
mergeDataRows Appending data to a current data set
Meschede Meschede (1986) Zr/4-2Nb-Y
Mesonorm Improved Mesonorm for granitoid rocks
Middlemost Middlemost's diagram (1985)
MiddlemostPlut Middlemost's diagram (1985)
millications Millications
Misc Miscellaneous geochemical indexes
Miyashiro SiO2-FeOt/MgO diagram (Miyashiro 1974)
Mode Approximating the mode by least-squares method
ModeAll Approximating the mode by least-squares method
ModeC Approximating the mode by least-squares method
ModeMain Approximating the mode by least-squares method
molecularWeight Calculating molecularWeights of oxides
Mullen Mullen (1983) 10MnO-TiO2-10P2O5
multiple Multiple binary plots
multipleMjr Multiple binary plots
multiplePerPage Plotting plates of several diagrams
multipleTrc Multiple binary plots
mzSaturation Monazite saturation (Montel 1993)

-- N --

NaAlK Na2O - Al2O3 - K2O (mol. %) diagram
Niggli Niggli's values
normalize2total Recast to given sum
Norry Pearce and Norry (1979)

-- O --

OConnor Classification diagram for siliceous igneous rocks, based on Fsp composition (O'Connor 1965)
OConnor.mod Classification diagram for siliceous igneous rocks, based on Fsp composition (O'Connor 1965)
OConnorPlut Classification diagram for siliceous igneous rocks, based on Fsp composition (O'Connor 1965)
OConnorVolc Classification diagram for siliceous igneous rocks, based on Fsp composition (O'Connor 1965)

-- P --

pairsCorr Statistics: Correlation
pairsMjr Statistics: Correlation
pairsTrc Statistics: Correlation
panel.cor Statistics: Correlation
panel.cov Statistics: Correlation
panel.hist Statistics: Correlation
panel.smooth Statistics: Correlation
pdfAll Save all graphics to PDF
Pearce1982 Pearce (1982)
Pearce1996 Nb/Y - Zr/Ti diagram (Winchester + Floyd 1977, modified by Pearce 1996)
PearceEtAl Pearce et al. (1977) MgO-FeOt-Al2O3
PearceGranite Pearce et al. (1984)
PeceTaylor SiO2-K2O diagram (Peccerillo + Taylor 1976)
peterplot Anomaly plot
Plate Plotting plates of several diagrams
Plate editing Editing the plate properties/all its plots simultaneously
plate0YLim Editing the plate properties/all its plots simultaneously
plateAnnotationsRemove Editing the plate properties/all its plots simultaneously
plateBW Editing the plate properties/all its plots simultaneously
plateCex Editing the plate properties/all its plots simultaneously
plateCexLab Editing the plate properties/all its plots simultaneously
plateCexMain Editing the plate properties/all its plots simultaneously
plateCol Editing the plate properties/all its plots simultaneously
plateExpand Editing the plate properties/all its plots simultaneously
plateExtract Editing the plate properties/all its plots simultaneously
plateLoad Plotting plates of several diagrams
platePch Editing the plate properties/all its plots simultaneously
platePS Plotting plates of several diagrams
plateRedraw Plotting plates of several diagrams
plateSave Plotting plates of several diagrams
plateXLim Editing the plate properties/all its plots simultaneously
plateYLim Editing the plate properties/all its plots simultaneously
plotPlate Plot Plate of Diagrams
plotWithCircles xyz plotWithCircles
plotWithLimits Binary plot
prComp Statistics: Principal components
printSamples Display samples
printSingle Display a variable
profiler Profile plotting
profiler.r Profile plotting
psAll Save all graphics to PS

-- Q --

QAPF QAPF diagram (Streckeisen 1974, 1978)
QAPFPlut QAPF diagram (Streckeisen 1974, 1978)
QAPFVolc QAPF diagram (Streckeisen 1974, 1978)
quitGCDkit Exit GCDkit

-- R --

r2clipboard Copy results to clipboard
recast Recast to given sum
reciprocalIso Binary plots of reciprocal element concentration vs initial isotopic composition
refreshFig Redrawing/refreshing a Figaro plot
regular expression Implementation of regular expressions in GCDkit
regular expressions Implementation of regular expressions in GCDkit
regular.expression Implementation of regular expressions in GCDkit
regular.expressions Implementation of regular expressions in GCDkit

-- S --

saveData Save data file
saveResults Save results
saveResultsIso Save Sr-Nd isotopic data
sazava Whole-rock composition of the Sazava suite, Central Bohemian Plutonic Complex
Scale: axis labels Plot editing: Scaling text or plotting symbols
Scale: subtitle Plot editing: Scaling text or plotting symbols
Scale: symbols Plot editing: Scaling text or plotting symbols
Scale: title Plot editing: Scaling text or plotting symbols
Schandl Schandl and Gorton (2002)
selectAll Select whole dataset
selectByDiagram Selecting subset by diagram
selectByLabel Select subset by sample name or label
selectColumnLabel Selecting a single variable in GCDkit
selectColumnsLabels Selecting several data columns
selectNorm Selecting the normalization data for spiderplots
selectSamples Select subset
selectSubset Select subset
setCex Set uniform symbols size
setShutUp Quiet mode?
Shand A/CNK-A/NK diagram (Shand 1943)
Shervais Shervais (1982)
showColours Show available colours
showColours2 Show available colours
showLegend Display legend
showSymbols Show available symbols
spider Spider plot(s): Selected samples
spider.contour Spider plot(s): Selected samples
spider.individual Spider plot(s): Selected samples
spider2norm Spider plot(s): Selected samples, double normalized
spiderBoxplot Spider plot(s): Selected samples - summary boxplot
spiderByGroupFields Spider plot(s) - by group fields
spiderByGroupPatterns Spider plot(s) - by group patterns
spiderplot.r Spider plot(s): Selected samples
spider_double_norm.r Spider plot(s): Selected samples, double normalized
srnd Recalculations of the Sr-Nd isotopic data
Statistics: Correlation: majors Statistics: Correlation
Statistics: Correlation: traces Statistics: Correlation
Statistics: Majors summaryAll/selection Statistics: Statistical summaries for the whole data set or its subset
Statistics: Majors summaryByGroups Statistics: Statistical summaries by groups
Statistics: Trace summaryAll/selection Statistics: Statistical summaries for the whole data set or its subset
Statistics: Trace summaryByGroups Statistics: Statistical summaries by groups
statsByGroup Statistics by groups
statsByGroupPlot Statistics: Plot summary by element and group
Streckeisen Improved Mesonorm for granitoid rocks
strip Statistics: Stripplot by groups
stripBoxplot Statistics: Stripplot by groups - with boxplots
Stripplot isotopic ratios/model ages Statistical plots of isotopic ratios/model ages
stripplotIso Statistical plots of isotopic ratios/model ages
subsetBoolean Select subset by Boolean condition
subsetRange Select subset by range
summaryAll Statistics: Statistical summaries for the whole data set or its subset
summaryByGroup Statistics: Statistical summaries by groups
summaryByGroupMjr Statistics: Statistical summaries by groups
summaryByGroupTrc Statistics: Statistical summaries by groups
summaryMajor Statistics: Statistical summaries for the whole data set or its subset
summaryRangesByGroup Statistics: Statistical summaries by groups
summarySingle Statistics: Single variable all/selection
summarySingleByGroup Statistics: Single variable by groups
summaryTrace Statistics: Statistical summaries for the whole data set or its subset
Sylvester Sylvester (1989)

-- T --

TAS IUGS recommended TAS (Le Bas et al. 1986)
TASadd IUGS recommended TAS (Le Bas et al. 1986)
TASMiddlemost Middlemost's modification of TAS diagram
TASMiddlemostPlut Middlemost's modification of TAS diagram
TASMiddlemostVolc Middlemost's modification of TAS diagram
ternary Ternary plot
tetrad Lanthanide tetrad effect
threeD 3D plot
triplot Ternary plot
triplotadd Ternary plot

-- V --

Verma Major-element based discrimination plots for (ultra-)basic rocks (Verma et al. 2006)
Villaseca B-A plot (modified by Villaseca et al. 1998)

-- W --

Wedge Wedge diagrams (Ague 1994)
Whalen A type granitoids (Whalen et al. 1987)
WinFloyd1 Nb/Y - Zr/TiO2 diagram (Winchester + Floyd 1977)
WinFloyd2 Zr/TiO2 - SiO2 (Winchester + Floyd 1977)
Wood Wood (1980)
WRComp Approximating the mode by least-squares method

-- Z --

Zooming: Scale x axis Plot editing: Zooming
Zooming: Scale y axis Plot editing: Zooming
Zooming: Zoom in Plot editing: Zooming
Zooming: Zoom out to original size Plot editing: Zooming
zrSaturation Zircon saturation (Watson + Harrison 1983)

-- misc --

.claslist List of available classification schemes
87Sr/86Sr vs EpsNdi Binary plot of initial Sr isotopic ratios vs. initial epsilon Nd values